Publications

FY18
2017 - 2018

  • Olinski, R., Gackowski, D., Cooke, M.S. (2017). Endogenously generated DNA nucleobase modifications source, and significance as possible biomarkers of malignant transformation risk, and role in anticancer therapy. Biochim Biophys Acta, 1869(1):29-41. doi: 10.1016/j.bbcan.2017.11.002. View
  • Niu, G., Franc̨a, C., Zhang, G., Roobsoong, W., Nguitragool, W., Wang, X., Prachumsri, J., Butler, B.S., Li, J. (2017). The fibrinogen-like domain of FREP1 protein is a broad-spectrum malaria transmission-blocking vaccine antigen. JBC, doi: 10.1074/jbc.M116.773564. View
  • Niu, G., Zhang, G., Franca, C., Cui, Y., Munga, S., Afrane, Y., Li, J. (2017). FBN30 in wild Anopheles gambiae functions as a pathogen recognition molecule against clinically circulating Plasmodium falciparum in malaria endemic areas in Kenya. Sci Rep, 7(1):8577. doi: 10.1038/s41598-017-09017-3. View
  • Banda, S., Cao, N., Tse-Dinh, Y.C. (2017). Distinct Mechanism Evolved for Mycobacterial RNA Polymerase and Topoisomerase I Protein-Protein Interaction. J Mol Biol, 429(19):2931-2942. doi: 10.1016/j.jmb.2017.08.011. View
  • Boudalis, A.K., Rogez, G., Heinrich, B., Raptis, R.G., Turek, P. (2017). Towards ionic liquids with tailored magnetic properties: bmim+ salts of ferro- and antiferromagnetic Cu triangles. Dalton Trans, 46(36):12263-12273. doi: 10.1039/c7dt02472j. View
  • Liu, Y., Berrido, A.M., Hua, Z.C., Tse-Dinh, Y.C., Leng, F. (2017). Biochemical and biophysical properties of positively supercoiled DNA. Biophys Chem, pii: S0301-4622(17)30241-7. doi: 10.1016/j.bpc.2017.08.008. View
  • Garabedian, A., Benigni, P., Ramirez, C.E., Baker, E.S., Liu, T., Smith, R.D., Fernandez-Lima, F. (2017). Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS. J Am Soc Mass Spectrom, doi: 10.1007/s13361-017-1787-8. View
  • Gc, J.B., Pokhrel, R., Bhattarai, N., Johnson, K.A., Gerstman, B.S., Stahelin, R.V., Chapagain, P.P. (2017). Graphene-VP40 interactions and potential disruption of the Ebola virus matrix filaments. Biochem Biophys Res Commun, pii: S0006-291X(17)31812-0. doi: 10.1016/j.bbrc.2017.09.052. View
  • Lee, S.S., Ding, Y., Karapetians, N., Rivera-Perez, C., Noriega, F.G., Adams, M.E. (2017). Curr Biol, (27)18:2798-2809. doi: 10.1016/j.cub.2017.08.017. View
  • Gu, S., Lai, Y., Chen, H., Liu, Y., Zhang, Z. (2017). miR-155 mediates arsenic trioxide resistance by activating Nrf2 and suppressing apoptosis in lung cancer cells. Sci Rep, (1):12155. doi: 10.1038/s41598-017-06061-x. View
  • Rivera-Pérez, C., Clifton, M.E., Noriega, F.G. (2017). How micronutrients influence the physiology of mosquitoes. Curr Opin Insect Sci, 23:112-117. doi: 10.1016/j.cois.2017.07.002. View
  • Zhi, X., Dages, S., Dages, K., Liu, Y., Hua, Z.C., Makemson, J., Leng, F. (2017). Transient and dynamic DNA supercoiling potently stimulates the leu-500 promoter in Escherichia coli. J Biol Chem, doi: 10.1074/jbc.M117.794628. View
  • Molano-Arevalo, J.C., Dit Fouque, K.J., Khoa, N.P., Miksovska, J., Ridgeway, M.E., Park, M.A., Fernandez-Lima, F. (2017). Characterization of Intramolecular Interactions of Cytochrome c Using Hydrogen Deuterium Exchange - Trapped Ion Mobility Spectrometry – Mass Spectrometry and Molecular Dynamics. Anal. Chem., doi 10.1021/acs.analchem.7b00844. View
  • Chen, C., Jiang, X., Gu, S., Lai, Y., Liu, Y., Zhang, Z. (2016). Protection of Nrf2 against arsenite-induced oxidative damage is regulated by the cyclic guanosine monophosphate-protein kinase G signaling pathway. Environ Toxicol, doi: 10.1002/tox.22374. View
  • Chen, W., Tuladhar, A., Rolle, S., Lai, Y., Del Rey, F.R., Zavala, C.E., Liu, Y., Rein, K.S. (2017). Brevetoxin-2, is a unique inhibitor of the C-terminal redox center of mammalian thioredoxin reductase-1. Toxicol Appl Pharmacol, doi: 10.1016/j.taap.2017. View
  • Camacho, M., Oliva, M., Serbus, L.R. (2017). Dietary saccharides and sweet tastants have differential effects on colonization of Drosophila oocytes by Wolbachia endosymbionts. Biol Open, 6(7):1074-1083. doi: 10.1242/bio.023895. View
  • Ahrens, J.B., Nunez-Castilla, J., Siltberg-Liberles, J. (2017). Evolution of intrinsic disorder in eukaryotic proteins. Cell Mol Life Sci, 74(17):3163-3174. doi: 10.1007/s00018-017-2559-0. View
  • Sodero, A.O., Rodriguez-Silva, M., Salio, C., Sassoè-Pognetto, M., Chambers, J.W. (2017). Sab is differentially expressed in the brain and affects neuronal activity. Brain Res, 1670:76-85. doi: 10.1016/j.brainres.2017.06.005. View
  • Gc, J.B., Gerstman, B.S., Chapagain, P.P. (2017). Membrane association and localization dynamics of the Ebola virus matrix protein VP40. Biochim Biophys Acta, 1859(10):2012-2020. doi: 10.1016/j.bbamem.2017.07.007. View

FY17
2016 - 2017

  • Medina, J., Nagesetti, A., McGoron, A.J., Leng, F. (2017). Chemical cross-linking of doxorubicin to synthetic oligonucleotides by formaldehyde. The FASEB Journal, 31:lb52. View
  • Montalvo, A., Tse-Dinh, Y.C., Liu, Y., Swartzon, M., Hechtman, K.S., Myer, G. (2017). Precision Sports Medicine: The Future of Advancing Health and Performance in Youth and Beyond. Strength & Conditioning Journal, 39(2): 48-58. doi: 10.1519/SSC.0000000000000292. View
  • Serbus, L.R., Rodriguez, B.G., Sharmin, Z., Momtaz, A.J.M.Z., Christensen, S. (2017). Predictive Genomic Analyses Inform the Basis for Vitamin Metabolism and Provisioning in Bacteria-Arthropod Endosymbioses. G3, 7(6):1887-1898. doi: 10.1534/g3.117.042184. View.
  • Bhattarai, N., GC, J.B., Gerstman, B.S., Stahelin, R.V., Chapagain, P.P. (2017). Plasma membrane association facilitates conformational changes in the Marburg virus protein VP40 dimer. RSC Adv, 7(37):22741-22748. doi: 10.1039/c7ra02940c. View
  • Cickovski, T., Peake, E., Aguiar-Pulido, V., Narasimhan, G. (2017). ATria: a novel centrality algorithm applied to biological networks. BMC Bioinformatics, 18(Suppl 8):239. doi: 10.1186/s12859-017-1659-z. View
  • Ranjan, N., Story, S., Fulcrand, G., Leng, F., Ahmad, M., King, A., Sur, S., Wang, W., Tse-Dinh, Y.C., Arya, D.P. (2017). Selective Inhibition of Escherichia coli RNA and DNA Topoisomerase I by Hoechst 33258 Derived Mono- and Bisbenzimidazoles. J Med Chem, 60(12):4904-4922. doi: 10.1021/acs.jmedchem.7b00191. View
  • Benigni, P., Sandoval, K., Thompson, C.J., Ridgeway, M.E., Park, M.A., Gardinali, P., Fernandez-Lima, F. (2017). Analysis of Photoirradiated Water Accommodated Fractions of Crude Oils Using Tandem TIMS and FT-ICR MS. Environ. Sci. Technol., 51(11):5978-5988. doi 1021/acs.est.7b00508. View
  • Ren, Y., Lai, Y., Laverde, E.E., Lei, R., Rein, H.L., Liu, Y. (2017). Modulation of trinucleotide repeat instability by DNA polymerase β polymorphic variant R137Q. PLoS One., 12(5):e0177299. doi: 10.1371/journal.pone.0177299. View
  • Wijesinghe, K.J., Urata, S., Bhattarai, N., Kooijman, E.E., Gerstman, B.S., Chapagain, P.P., Li, S., Stahelin, R.V. (2017). Detection of lipid-induced structural changes of the Marburg virus matrix protein VP40 using hydrogen/deuterium exchange-mass spectrometry. J Biol Chem,292(15):6108-6122. doi: 10.1074/jbc.M116.758300. View
  • Zhou, Q., Zhou, Y.N., Jin, D.J., Tse-Dinh, Y.C. (2017). Deacetylation of topoisomerase I is an important physiological function of E. coli CobB. Nucleic Acids Res, 45(9):5349-5358. doi: 10.1093/nar/gkx250. View
  • Hernández-Martínez, S., Sánchez-Zavaleta, M., Brito, K., Herrera-Ortiz, A., Ons, S., Noriega, F.G. (2017). Allatotropin: A pleiotropic neuropeptide that elicits mosquito immune responses. PLoS One, 12(4):e0175759. doi: 10.1371/journal.pone.0175759. View
  • Raji, J.I., DeGennaro, M. (2017). Genetic Analysis of Mosquito Detection of Humans. Curr Opin Insect Sci, 20:34–38, doi: 10.1016/j.cois.2017.03.003. View
  • Meiselman, M., Lee, S.S., Tran, R.T., Dai, H., Ding, Y., Rivera-Perez, C., Wijesekera, T.P., Dauwalder, B., Noriega, F.G., Adams, M.E. (2017). Endocrine network essential for reproductive success in Drosophila melanogaster. Proc Natl Acad Sci U S A,114(19):E3849-E3858. doi: 10.1073/pnas.1620760114. View
  • White, P.M., Serbus, L.R., Debec, A., Codina, A., Bray, W., Guichet, A., Lokey, R.S., Sullivan, W. (2017). Reliance of Wolbachia on High Rates of Host Proteolysis Revealed by a Genome-Wide RNAi Screen of Drosophila Cells. Genetics, 205(4):1473-1488. doi: 10.1534/genetics.116.198903. View
  • Liu, D., Shao, Y., Chen, G., Tse-Dinh, Y.C., Piccirilli, J.A., Weizmann, Y. (2017). Synthesizing topological structures containing RNA. Nat Commun, 8:14936. doi: 10.1038/ncomms14936. View
  • Chambers, T.P., Santiesteban, L., Gomez, D., Chambers, J.W. (2017). Sab mediates mitochondrial dysfunction involved in imatinib mesylate-induced cardiotoxicity. Toxicology, 382:24-35. doi: 10.1016/j.tox.2017.03.006. View
  • Luo, Q., Beaver, J.M., Liu, Y., Zhang, Z. (2017). Dynamics of p53: A Master Decider of Cell Fate. Genes (Basel), 8(2): 66. doi: 10.3390/genes8020066. View
  • Mittal, R., Aranke, M., Debs, L.H., Nguyen, D., Patel, A.P., Grati, M., Mittal, J., Yan, D., Chapagain, P., Eshraghi, A.A., Liu, X.Z. (2017). Indispensable Role of Ion Channels and Transporters in the Auditory System. J Cell Physiol, 232(4):743-758. doi: 10.1002/jcp.25631. View
  • Martínez-Rincón, R.O., Rivera-Pérez, C., Diambra, L., Noriega, F.G. (2017). Modeling the flux of metabolites in the juvenile hormone biosynthesis pathway using generalized additive models and ordinary differential equations. PLoS One, 12(2):e0171516 doi: 10.1371/journal.pone.0171516. View
  • Ioannou, D., Millan, N.M., Jordan, E., Tempest, H.G. (2017). A new model of sperm nuclear architecture following assessment of the organization of centromeres and telomeres in three-dimensions. Scientific Reports, 7: 41585. doi:10.1038/srep41585. View/
  • Cheng, B., Zhou, Q., Weng, L., Leszyk, J.D., Greenberg, M.M., Tse-Dinh, Y.C. (2017). Identification of proximal sites for unwound DNA substrate in E. coli topoisomerase I with oxidative crosslinking. FEBS Lett, 591(1): 28-38. doi: 10.1002/1873-3468.12517. View
  • Butcher, D., Bernad, S., Derrien, V., Sebban, P., Miksovska, J. (2017). Role of Ionic Strength and pH in Modulating Thermodynamic Profiles Associated with CO Escape from Rice Nonsymbiotic Hemoglobin 1. J Phys Chem B, 121(2):351-364. doi: 10.1021/acs.jpcb.6b06933. View
  • Yu, X., Zhang, M., Annamalai, T., Bansod, P., Narula, G., Tse-Dinh, Y.C., Sun, D. (2017). Synthesis, evaluation, and CoMFA study of fluoroquinophenoxazine derivatives as bacterial topoisomerase IA inhibitors. Eur J Med Chem, 125:515-527. doi: 10.1016/j.ejmech.2016.09.053. View
  • Jalal, A.H., Umasankar, Y., Gonzalez, P.J., Alfonso, A., Bhansali, S. (2017). Multimodal technique to eliminate humidity interference for specific detection of ethanol. Biosens Bioelectron, 87:522-530. doi: 10.1016/j.bios.2016.08.106. View
  • Benigni, P., Bravo, C., Quirke, J.M.E., DeBord, J.H., Mebel, A.M., Fernandez-Lima, F. (2016). Analysis of geologically relevant metal-porphyrins using Trapped Ion Mobility Spectrometry-Mass Spectrometry and theoretical calculations. Energy & Fuels, 30 (12), 10341–10347. doi 10.1021/acs.energyfuels.6b02388. View
  • Panday, N., Qian, G., Wang, X., Chang, S., Pandey, P., He, J. (2016). Simultaneous Ionic Current and Potential Detection of Nanoparticles by a Multifunctional Nanopipette. ACS Nano, 10(12),11237–11248. doi: 10.1021/acsnano.6b06307. View
  • Dos Santos, H.G., Siltberg-Liberles, J. (2016). Paralog-Specific Patterns of Structural Disorder and Phosphorylation in the Vertebrate SH3-SH2-Tyrosine Kinase Protein Family. Genome Biol Evol, 8(9):2806-25. doi: 10.1093/gbe/evw194. View
  • Jani, M., Mathee, K., Azad, R.K. (2016). Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering. Front Microbiol, 7:1210. doi: 10.3389/fmicb.2016.01210. View
  • GC, J.B., Gerstman, B.S., Stahelin, R.V., Chapagain, P.P. (2016). The Ebola virus protein VP40 hexamer enhances the clustering of PI(4,5)P2 lipids in the plasma membrane. Phys Chem Chem Phys, 18(41):28409-28417. View
  • Beaver, J.M., Lai, Y., Rolle, S.J., Liu, Y. (2016). Proliferating cell nuclear antigen prevents trinucleotide repeat expansions by promoting repeat deletion and hairpin removal. DNA Repair (Amst), 48:17-29. doi: 10.1016/j.dnarep.2016.10.006. View
  • Rahaman, J., Siltberg-Liberles, J. (2016). Avoiding regions symptomatic of conformational and functional flexibility to identify antiviral targets in current and future coronaviruses. Genome Biol Evol, 8(11):3471-3484. doi: 10.1093/gbe/evw246. View
  • Gu, M., Berrido, A., Gonzalez, W.G., Miksovska, J., Chambers, J.W., Leng, F. (2016). Fluorescently labeled circular DNA molecules for DNA topology and topoisomerases. Sci Rep, 6:36006. doi: 10.1038/srep36006. View
  • Mittal, R., Lisi, C.V., Kumari, H., Grati, M., Blackwelder, P., Yan, D., Jain, C., Mathee, K., Weckwerth, P.H., Liu, X.Z. (2016). Otopathogenic Pseudomonas aeruginosa Enters and Survives Inside Macrophages. Front Microbiol, 7: 1828. View
  • Adams, K.J., Montero, D., Aga, D., Fernandez-Lima, F. (2016). Isomer Separation of Polybrominated Diphenyl Ether Metabolites using nanoESI-TIMS-MS. Int J Ion Mobil Spectrom, 19(2):69-76. View
  • Adams, K.J., DeBord, J.D., Fernandez-Lima, F. (2016). Lipid specific molecular ion emission as a function of the primary ion characteristics in TOF-SIMS. J Vac Sci Technol B Nanotechnol Microelectron, 34(5):051804. View
  • Garabedian, A., Butcher, D., Lippens, J.L.,Miksovska, J., Chapagain, P.P., Fabris, D., Ridgeway, M.E., Park, M.A., Fernandez-Lima, F. (2016). Structures of the kinetically trapped i-motif DNA intermediates. Phys Chem Chem Phys, 18(38):26691-26702. View
  • Vanbellingen, Q.P., Castellanos, A., Rodriguez-Silva, M., Paudel, I., Chambers, J.W., Fernandez-Lima, F. (2016). Analysis of Chemotherapeutic Drug Delivery at the Single Cell Level Using 3D-MSI-TOF-SIMS. J Am Soc Mass Spectrom, 27(12):2033-2040. View
  • Lai, Y., Budworth, H., Beaver, J.M., Chan, N.L.S., Zhang, Z., McMurray, C., Liu, Y. (2016). Crosstalk between MSH2–MSH3 and pol β promotes trinucleotide repeat expansion during base excision repair. Nat Commun, 7:12465. doi: 10.1038/ncomms12465. View
  • Benigni, P., Fernandez-Lima, F. (2016). Oversampling Selective Accumulation Trapped Ion Mobility Spectrometry Coupled to FT-ICR MS: Fundamentals and Applications. Anal Chem, 88(14):7404-12. doi: 10.1021/acs.analchem.6b01946. View
  • Tiwari, P.B., Chapagain, P.P., Banda, S., Darici, Y., Üren, A.,* Tse-Dinh, Y.C.* (2016). Characterization of molecular interactions between E. coli RNA polymerase and topoisomerase I by molecular simulations. FEBS Lett, 590(17):2844-51. doi: 10.1002/1873-3468.12321. View
  • Ramirez, C.E., Nouzova, M., Benigni, P., Quirke, J.M., Noriega, F.G., Fernandez-Lima, F. (2016). Fast, ultra-trace detection of juvenile hormone III from mosquitoes using mass spectrometry. Talanta, 159:371-8. doi: 10.1016/j.talanta.2016.06.041. View
  • Ahrens, J., Dos Santos, H.G., Siltberg-Liberles, J. (2016). The Nuanced Interplay of Intrinsic Disorder and Other Structural Properties Driving Protein Evolution. Mol Biol Evol, 33(9):2248-56. doi: 10.1093/molbev/msw092. View
  • Lopez, S.M., Agoulnik, A.I., Zhang, M., Peterson, L.E., Suarez, E., Gandarillas, G.A., Frolov, A., Li, R., Rajapakshe, K., Coarfa, C., Ittmann, M.M., Weigel, N.L., Agoulnik, I.U. (2016). Nuclear Receptor Corepressor 1 Expression and Output Declines with Prostate Cancer Progression. Clin Cancer Res, 22(15):3937-49. doi:10.1158/1078-0432.CCR-15-1983. View
  • Mittal, R., Patel, A.P., Debs, L.H., Nguyen, D., Patel, K., Grati, M., Mittal, J., Yan, D., Chapagain, P., Liu, X.Z. (2016). Intricate functions of matrix metalloproteinases in physiological and pathological conditions. J Cell Physiol, 231(12):2599-621. doi: 10.1002/jcp.25430. View
  • GC, J.B., Johnson K.A., Husby, M.L., Frick, C.T., Gerstman, B.S., Stahelin, R.V, Chapagain, P.P. (2016). Interdomain salt-bridges in the Ebola virus protein VP40 and their role in domain association and plasma membrane localization. Protein Sci., 25(9):1648-58. doi:10.1002/pro.2969. View
  • Lai, Y., Jiang, Z., Zhou, J., Osemota, E., Liu, Y. (2016). AP endonuclease 1 prevents the extension of a T/G mismatch by DNA polymerase β to prevent mutations in CpGs during base excision repair. DNA Repair, 43: 89-97. doi: 10.1016/j.dnarep.2016.03.006. View
  • Leng, F. (2016). Protein-induced DNA linking number change by sequence-specific DNA binding proteins and its biological effects. Biophysical Reviews, 8(3):197-207. doi: 10.1007/s12551-016-0204-z. View
  • Ahmad, M., Xue, Y., Lee. S.K., Martindale, J.L., Shen, W., Li, W., Zou, S., Ciaramella, M., Debat, H., Nadal, M., Leng, F., Zhang, H., Wang, Q., Siaw, G.E., Niu, H., Pommier, Y., Gorospe, M., Hsieh, T.S., Tse-Dinh, Y.C., Xu, D., Wang, W. (2016). RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals. Nucleic Acids Res, 44(13):6335-49. doi: 10.1093/nar/gkw508. View
  • Villalobos-Sambucaro, M.J., Diambra, L.A., Noriega, F.G., Ronderos, J.R. (2016). Allatostatin-C antagonizes the synergistic myostimulatory effect of allatotropin and serotonin in rhodnius prolixus (stal). Gen Comp Endocrinol, 233: 1-7. doi: 10.1016/j.ygcen.2016.05.009. View
  • Banda, S., Tiwari, P.B., Darici, Y., Tse-Dinh, Y.C. (2016). Investigating direct interaction between Escherichia coli topoisomerase I and RecA. Gene,585(1):65-70. doi: 10.1016/j.gene.2016.03.013. View
  • Huang, W., Kazmierczak, K., Zhou, Z., Aguiar-Pulido, V., Narasimhan. G., Szczesna-Cordary, D. (2016). Gene expression patterns in transgenic mouse models of hypertrophic cardiomyopathy caused by mutations in myosin regulatory light chain. Arch Biochem Biophys, 601:121-32. doi: 10.1016/j.abb.2016.02.022. View
  • Mittal, R., Chan, B., Grati, M., Mittal, J., Patel, K., Debs, L.H., Patel, A.P., Yan, D., Chapagain, P., Liu, X.Z. (2016). Molecular Structure and Regulation of P2X Receptors With a Special Emphasis on the Role of P2X2 in the Auditory System. J Cell Physiol,231 (8):1656-70. doi: 10.1002/jcp.25274. View
  • Twomey, M., Mendez, E., Manian, R.K., Lee, S., Moon, J.H. (2016). Mitochondria-specific conjugated polymer nanoparticles. Chem Commun (Camb), 52(27): 4910–4913. doi: 10.1039/c6cc00810k. View
  • Sandhaus, S., Annamalai, T., Welmaker, G., Houghten, R. A., Paz, C., Garcia, P. K., Andres, A., Narula, G., Rodrigues Felix, C., Geden, S., Netherton, M., Gupta, R., Rohde, K. H., Giulianotti, M.A., Tse-Dinh, Y.C. (2016). Small Molecule Inhibitors Targeting Topoisomerase I as Novel Antituberculosis Agents. Antimicrob Agents Chemother, 60 (7):4028-4036. doi: 10.1128/AAC.00288-16. View
  • Christensen, S., Pérez Dulzaides, R., Hedrick, V.E., Momtaz, A.J., Nakayasu, E.S., Paul, L.N., Serbus, L.R.(2016). Wolbachia endosymbionts modify Drosophila ovary protein levels in a context-dependent manner. Appl Environ Microbiol, 82(17):5354-63. doi: 10.1128/AEM.01255-16. View

FY16
2015 - 2016

  • Benigni, P., Marin, R., Molano-Arevalo, J.C., Garabedian, A., Wolff, J.J., Ridgeway, M.E., Park, M.A., Fernandez-Lima, F. (2016). Towards the Analysis of High Molecular Weight Proteins and Protein complexes using TIMS-MS. Int J Ion Mobil Spectrom, 19(2):95-104. View
  • Dos Santos, H.G., Nunez-Castilla J., Siltberg-Liberles, J. (2016). Functional Diversification after Gene Duplication: Paralog Specific Regions of Structural Disorder and Phosphorylation in p53, p63, and p73. PLoS One, 11(3):e0151961. doi: 10.1371/journal.pone.0151961. View
  • Benigni, P., DeBord J.D., Thompson, C.J., Gardinali, P., Fernandez-Lima, F. (2016). Increasing Polyaromatic Hydrocarbon (PAH) Molecular Coverage during Fossil Oil Analysis by Combining Gas Chromatography and Atmospheric-Pressure Laser Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR MS). Energy Fuels, 30(1):196-203. View
  • Aguiar-Pulido, V., Huang, W., Suarez-Ulloa, V., Cickovski, T., Mathee, K., Narasimhan, G. (2016). Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis. Evol Bioinform Online, 12(1):5-16. View
  • Agoulnik, I.U., Agoulnik, A.I. (2015). Long-Lasting Consequences of Testosterone Exposure. Endocrinology, 156(10):3488-9. View
  • Zhang, Y., Liu, J., Li, D., Dai, X., Yan, F., Conlan, X.A., Zhou, R., Barrow, C.J., He, J., Wang, X., Yang, W. (2016). Self-Assembled Core-Satellite Gold Nanoparticle Networks for Ultrasensitive Detection of Chiral Molecules by Recognition Tunneling Current. ACS Nano, 10(5):5096-103. View
  • Pham, K., Miksovska, J. (2016). Molecular insight of DREAM and presenilin 1 C-terminal fragment interactions. FEBS Lett, 590(8):1114-22. View
  • Dos Santos, H.G., Nunez-Castilla, J., Siltberg-Liberles, J. (2016). Functional Diversification after Gene Duplication: Paralog Specific Regions of Structural Disorder and Phosphorylation in p53, p63, and p73. PLoS One, 11(3):e0151961. doi: 10.1371/journal.pone.0151961. View
  • Gonzalez, W.G., Ramos, V., Diaz, M., Garabedian, A., Molano-Arevalo, J.C., Fernandez-Lima, F., Miksovska, J. (2016). Characterization of the Photophysical, Thermodynamic, and Structural Properties of the Terbium(III)-DREAM Complex. Biochemistry, 55(12):1873-86. View
  • Shan, Y., Panday, N., Myoung, Y., Twomey, M., Wang, X., Li, W., Celik, E., Moy, V., Wang, H., Moon, J.H., He, J. (2016). Scanning Ion Conductance Microscopic Study for Cellular Uptake of Cationic Conjugated Polymer Nanoparticles. Macromol Biosci, 16 (4):599-607. View
  • Sandhaus, S., Taylor, R., Edwards, T., Huddleston, A., Wooten, Y., Venkatraman, R., Weber, R.T., González-Sarrías, A., Martin, P.M., Cagle, P., Tse-Dinh, Y.C., Beebe, S.J., Seeram, N., Holder, A.A. (2016). A novel copper(II) complex identified as a potent drug against colorectal and breast cancer cells and as a poison inhibitor for human topoisomerase IIα. Inorg Chem Commun,64:45-49. View
  • Matthews, B.J., McBride, C.S., DeGennaro, M., Despo, O., Vosshall, L.B. (2016). The neurotranscriptome of the Aedes aegypti mosquito. BMC Genomics, 17:32. doi: 10.1186/s12864-015-2239-0. View
  • Ioannou, D., Miller, D., Griffin, D. K., Tempest H.G. (2016). Impact of sperm DNA chromatin in the clinic. J Assist Reprod Genet,33(2):157-66. View
  • Fulcrand, G., Chapagain, P., Dunlap, D., and * Leng, F.* (2016). Direct observation of a 91 bp LacI-mediated, negatively supercoiled DNA loop by atomic force microscope. FEBS Letters, 590(5):613-618. View
  • Fulcrand, G., Dages, S., Zhi, X., Chapagain, P., Gerstman, B. S., Dunlap, D., and Leng, F. (2016). DNA supercoiling, a critical signal regulating the basal expression of the lac operon in Escherichia coli. Scientific Reports, 6:19243. View
  • Rodriguez Pino, M., Castillo, B., Kim, B., Kim, L.W. (2015). PP2A/B56 and GSK3/Ras suppress PKB activity during Dictyostelium chemotaxis. Mol Biol Cell, 26(24):4347-57. View
  • Yang, J., Annamalai, T., Cheng, B., Banda, S., Tyagi, R., Tse-Dinh, Y.C. (2015). Antimicrobial Susceptibility and SOS-Dependent Increase in Mutation Frequency Are Impacted by Escherichia coli Topoisomerase I C-Terminal Point Mutation. Antimicrob Agents Chemother, 59(10):6195-202. View
  • Chambers, T.P., Portalatin, G.M., Paudel, I, Robbins, C.J., Chambers, J.W. (2015). Sub-chronic administration of LY294002 sensitizes cervical cancer cells to chemotherapy by enhancing mitochondrial JNK signaling. Biochem Biophys Res Commun,463(4):538-44. View
  • Mathee, K., Silver, L.L, Tatke, G. (2015). 70th Anniversary Collection for the Microbiology Society: Journal of Medical Microbiology. J Med Microbiol, 64(12):1457-61. View
  • Tan, K., Cao, N., Cheng, B., Joachimiak, A., Tse-Dinh, Y.C. (2015). Insights from the Structure of Mycobacterium tuberculosis Topoisomerase I with a Novel Protein Fold. J Mol Biol, 428(1):182-193. View
  • Mustafi, S., Veisaga, M.L., López L.A, Barbieri, M.A. (2015). A Novel Insight into Dehydroleucodine Mediated Attenuation of Pseudomonas aeruginosa Virulence Mechanism. Biomed Res Int., 216097. doi: 10.1155/2015/216097. View
  • Tan, K., Zhou, Q., Cheng, B., Zhang, Z., Joachimiak, A., Tse-Dinh, Y.C. (2015). Structural basis for suppression of hypernegative DNA supercoiling by E. coli topoisomerase I. Nucleic Acids Res, 43(22):11031-46. View
  • Roy, U., Barber, P., Tse-Dinh, Y.C., Batrakova, E.V., Mondal, D., Nair, M. (2015). Role of MRP transporters in regulating antimicrobial drug inefficacy and oxidative stress-induced pathogenesis during HIV-1 and TB infections. Front Microbiol,6:948. doi: 10.3389/fmicb.2015.00948. View
  • Saldana-Caboverde A., Perera E.M., Watkins-Chow D., Hansen N.F., Vemulapalli M., Mullikin J.C., Nisc Comparative Sequencing Program, Pavan W.J., Kos L. (2015). The transcription factors Ets1 and Sox10 interact during murine melanocyte development. Dev Biol, 407: 300-312. View
  • DeGennaro, M. (2015). The mysterious multi-modal repellency of DEET. Fly, 9:1, 45-51. View
  • Jiang, Z., Xu, M., Lai, Y., Laverde, E.E., Terzidis, M.A., Masi, A., Chatgilialoglu, C., & Liu, Y. (2015). Bypass of a 5 ,8-cyclopurine-2 -deoxynucleoside by DNA polymerase during DNA replication and base excision repair leads to nucleotidemisinsertions and DNA strand breaks. DNA Repair 33:24-34. View
  • Ioannou, D., Kandukuri, L., Simpson, J. L., & Tempest, H. G. (2015). Chromosome territory repositioning induced by PHA-activation of lymphocytes: A 2D and 3D appraisal. Molecular Cytogenetic 8 (47): doi:10.1186/s13039-015-0146-3. View

FY15
2014 - 2015

  • Ioannou D., & Tempest H. G. (2015). Meiotic Nondisjunction: Insights into the Origin and Significance of Aneuploidy in Human Spermatozoa. R. Bronson (Ed.), In The Male Role in Pregnancy Loss and Embryo Implantation Failure, Advances in Experimental Medicine and Biology 868. Springer International Publishing Switzerland. Book Chapter
  • Beaver J.M., Lai Y., Meng X., Casin A.H., Laverde E.E., & Liu Y. (2015). AP endonuclease 1 prevents trinucleotide repeat expansion via a novel mechanism during base excision repair. Nucl. Acids Res. doi: 10.1093/nar/gkv530. View
  • Frost, L., Baez, M. A., Harrilal, C., Garabedian, A., Fernandez-Lima F., and Leng, F. (2015). The dimerization state of the mammalian high mobility group protein AT-hook-2 (HMGA2). PLOS ONE, 10(6): e0130478. View
  • Benigni P., Thompson C.J., Ridgeway M.E., Park M.A., & Fernandez-Lima F. (2015). Targeted high-resolution ion mobility separation coupled to ultrahigh-resolution mass spectrometry of endocrine disruptors in complex mixtures. Anal Chem 87(8):4321-4325. View
  • Tiwari P.B., Wang X., He J., & Darici Y. (2015). Analyzing surface plasmon resonance data: Choosing a correct biphasic model for interpretation. Rev Sci Instrum. 86(3):035001 doi.10.1063/1.4914027. View
  • Chengzhi C., Jiang X., Lai Y., Liu Y., & Zhang Z. (2015). Resveratrol protects against arsenic trioxide-induced oxidative damage through maintenance of glutathione homeostasis and inhibition of apoptotic progression. Environ. Mol. Mutagen 56(3): 333–346. View
  • Schenk E.R., Almeida R., Miksovska J., Ridgeway M.E., Park M. A., & Fernandez-Lima F. (2015). Kinetic Intermediates of Holo- and Apo-Myoglobin Studied Using HDX-TIMS-MS and Molecular Dynamic Simulations. J. Am. Soc. Mass Spectrom 26(4):555-563. View
  • Schenk E.R., Nau F., Fernandez-Lima F. (2015). Theoretical predictor for candidate structure assignment from IMS data of biomolecule-related conformational space. Int. J. Ion Mobil. Spec. doi: 10.1007/s12127-015-0165-0. View
  • Alonso N., Guillen R., Chambers J.W., & Leng F. (2015). A rapid and sensitive high-throughput screening method to identify compounds targeting protein–nucleic acids interactions. Nucleic Acids Res 43(8):e52. doi: 10.1093/nar/gkv069. View
  • Twomey M., Vokatá T., Kumar M.R., & Moon J.H. (2015). Differential interactions of conjugated polymer nanoparticles with glycosaminoglycans in synthetic urine. The Royal Society of Chemistry 51(19): 4065-4068. View - Chayaratanasin P., Barbieri M.A., Suanpairintr N., & Adisakwattana S. (2015). Inhibitory effect of Clitoria ternatea flower petal extract on fructose-induced protein glycation and oxidation-dependent damages to albumin in vitro. BMC Complement Altern Med 15 (27) doi:10.1186/s12906-015-0546-2. View
  • Tse-Dinh Y.C. (2015).Targeting bacterial topoisomerase I to meet the challenge of finding new antibiotics. Future Med Chem 7(4); 459-471. View
  • Serbus L.R., White P.M., Silva J. P., Rabe A., Teixeira L., Albertson R., & Sullivan W.(2015). The impact of host diet on wolbachia titer in Drosophila. PLoS Pathog 11(3): 1-25. View
  • Christensen S., & Serbus L.R. (2015). Comparative Analysis of Wolbachia Genomes Reveals Streamlining and Divergence of Minimalist Two-Component Systems. G3 Journal. doi:10.1534/g3.115.017137. View
  • Cheng B., Annamalai T., Sandhaus S., Bansod P., & Tse-Dinh Y.C. (2015). Inhibition of Zn(II) Binding Type IA Topoisomerases by Organomercury Compounds and Hg(II). PLoS ONE DOI 10(3):1-14. View
  • Ioannou D., Kandukuri L., Quadri A., Becerra V., Simpson J.L & Tempest H.G. (2015). Spatial Positioning of all 24 Chromosomes in the Lymphocytes of Six Subjects: Evidence of Reproducible Positioning and Spatial Repositioning following DNA Damage with Hydrogen Peroxide and Ultraviolet B. PLoS ONE 10(3):1-24. View
  • Ryu M.H., Kang I.H., Nelson M.D., Jensen T.M., Lyuksyutova A.I., Siltberg-Liberles J., Raizen D.M., & Gomelsky M. (2014). Engineering adenylate cyclases regulated by near-infrared window light. Proc Natl Acad Sci 111(28):10167-10172. View
  • Schenk E.R., Nau F., Thompson C.J., Tse-Dinh Y.C., & Fernandez-Lima F. (2014). Changes in lipid distribution in E. coli strains in response to norfloxacin. Journal of Mass Spectrometry 50:88-94. View
  • Tiwari P.B., Astudillo L., Miksovska J., Wang X., Li W., Darici Y., & He J. (2014). Quantitative study of protein-protein interactions by quartz nanopipettes. The Royal Society of Chemistry 6:10255-10263. View
  • Feng L., Maddox M.M., Alam M.Z., Tsutsumi L.S., Narula G., Bruhn D.F., Wu X., Sandhaus S., Lee R. B., Simmons C.J., Tse-Dinh Y.C., Hurdle J.G., Lee R.E, & Sun D. (2014). Synthesis, Structure–Activity Relationship Studies, and Antibacterial Evaluation of 4-Chromanones and Chalcones, as Well as Olympicin A and Derivatives. Journal of Medicinal Chemistry 57(20):8398-8420. View
  • Xu M., Lai Y., Jiang Z., Terzidis M.A., Masi A., Chatgilialoglu C., & Liu Y. (2014). A 5', 8-cyclo-2'-deoxypurine lesion induces trinucleotide repeat deletion via a unique lesion bypass by DNA polymerase β. Nucleic Acids Research 42(22):13749-13763. View
  • Molano-Arevalo J.C., Hernandez D.R., Gonzalez W.G., Miksovska J., Ridgeway M.E., Park M.A., & Fernandez-Lima F. (2014). Flavin adenine dinucleotide structural motifs:from solution to gas phase. Anal Chem 86(20):10223-30. View